DreEX6021998 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27471028-27472343:+
Coord C1 exon
chr6:27471028-27471141
Coord A exon
chr6:27471711-27471824
Coord C2 exon
chr6:27472311-27472343
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTTTTGAATACAGACA
3' ss Score
5.54
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ACATAGACGAGTGCCAGGAGACCCCATGTCTCAATGGAGCACAGTGCATACAGGGTGTCGGCAACTTCACCTGTAAATGCCAAGCAGGTTACACTGGGTTCCTATGCGAGTCAG
Seq A exon
ACATCAACGAATGCATGTCAGTGCCATGTTTGAATGGAGGTGTGTGTGAAGACCTGGTAAATAACTACACCTGCACCTGTACAGCAAACTTCACTGGAAGCGCATGTGAGACAG
Seq C2 exon
AGTTGGTTGTTGCTGATGCTGCAAATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=74.4),PF0000822=EGF=PU(8.1=7.7)
A:
PF0000822=EGF=PD(89.2=84.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGACGAGTGCCAGGAGA
R:
TGTCTGATTTGCAGCATCAGCA
Band lengths:
146-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]