RnoEX6041018 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100406159-100411645:+
Coord C1 exon
chr9:100406159-100406272
Coord A exon
chr9:100406399-100406512
Coord C2 exon
chr9:100411520-100411645
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCATCTTTACTGTCCCTAGATG
3' ss Score
9.36
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
CCCAGTCTCCGTGTGACAACAAAGTGTGTCAAAATGGTGGCCAGTGCCAGGCAGAGAGCAGCTCTGCAGTATGTGTGTGTCAAGCTGGATACACTGGGGCCACCTGTGAGACCG
Seq A exon
ATGTGGATGAATGCAGCTCTGACCCATGCCTAAATGGTGGATCGTGTGTTGACCTGGTTGGAAACTACAGCTGTATTTGTGTGGAGCCCTTTGAAGGACCTCAGTGCGAGACAG
Seq C2 exon
GAAGCTACGTGGTGCCTTCGCCCTGCCTCTCCAACCCCTGCCTGAACGGGGGCACCTGTGTGGATGCTGACCAGGGATACGTGTGCGAATGCCCTGAAGGTTTCATGGGCTTGGACTGCAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTCCGTGTGACAACAA
R:
CTGCAGTCCAAGCCCATGAAA
Band lengths:
234-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]