BtaEX0033935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120769418-120775283:+
Coord C1 exon
chr3:120769418-120769531
Coord A exon
chr3:120769644-120769757
Coord C2 exon
chr3:120775158-120775283
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCTGCCACCCGCAGACG
3' ss Score
9.77
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAGAGTCTCCGTGCGATGACAGAGAGTGTCAGAACGGCGGCTGGTGCCGGGCGGAGGGCGGCGCCGCGGCGTGCGTGTGCCCAGCCGGCTACACAGGGGCGGCCTGCGAGACAG
Seq A exon
ACGTGGACGAGTGCAGCTCTGACCCCTGCCTGAACGGAGGCTCGTGTGTCGACCTGGTGGGGAATTTCACCTGCCTGTGTGCAGAACCCTTCGAGGGACCTCGCTGTGAGACAG
Seq C2 exon
GACACCACCCAGTGTCCGACGCCTGCCTCTCGGGCCCTTGCCAGAATGGAGGCACCTGTGTGGATGCAGATCAGGGCTACGTGTGCGAATGCCCTGAAGGCTTCATGGGTCTCGACTGCAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=76.9)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTCCGTGCGATGACAG
R:
CTGCAGTCGAGACCCATGAAG
Band lengths:
234-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development