GgaEX6045721 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5939819-5940648:+
Coord C1 exon
chr9:5939819-5939932
Coord A exon
chr9:5940105-5940218
Coord C2 exon
chr9:5940523-5940648
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGCCCTGTGTTACAGAGG
3' ss Score
9.27
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
AAGAGTCACCGTGTGAGACCAAGGTGTGCCAGAACGGCGGGACGTGCCAGGTGGCAAACGGGACGGCGGTGTGCACGTGCCAGCCGGGGTACGCAGGAGGAGATTGCGAGACAG
Seq A exon
AGGTGAACGAGTGCGAGTCCAGCCCCTGCCTGAACGGAGGGCACTGTGTTGACCTGGTTGACAACTACACGTGTGTGTGCCTGGAGCCCTTCGTGGGACAGCGCTGTGAGACAG
Seq C2 exon
GTGGCCCCCGTGTGCCCAGTGCCTGCCTCTCTAACCCCTGCCAGAACGGGGGCAGCTGCCTGGAGCTGGAGCAGGGCTATGCCTGTGACTGCCCAGAGGGCTACGCCGGGCAGGACTGCCGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'10-10,'10-8,12-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCACCGTGTGAGACCAA
R:
CAGTCCTGCCCGGCGTAG
Band lengths:
231-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]