HsaEX6019609 @ hg38
Exon Skipping
Gene
ENSG00000162804 | SNED1
Description
sushi, nidogen and EGF like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr2:241049022-241051860:+
Coord C1 exon
chr2:241049022-241049135
Coord A exon
chr2:241049817-241049933
Coord C2 exon
chr2:241051744-241051860
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCCCCCGCCCCCAGCCC
3' ss Score
9.7
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AAATCACAGCCATGCCCTGCAACATGAACACACAGTGCCCAGATGGGGGCTACTGCATGGAGCACGGCGGGAGCTACCTCTGCGTCTGCCACACCGACCACAATGCCAGCCACT
Seq A exon
CCCTGCCATCACCCTGCGACTCGGACCCCTGCTTCAACGGAGGCTCCTGCGATGCCCATGACGACTCCTACACCTGCGAGTGCCCGCGCGGGTTCCACGGCAAGCACTGCGAGAAAG
Seq C2 exon
CCCGGCCACACCTGTGCAGCTCAGGGCCCTGCCGGAACGGGGGCACGTGCAAGGAGGCGGGCGGCGAGTACCACTGCAGCTGCCCCTACCGCTTCACTGGGAGGCACTGTGAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162804-'35-45,'35-40,36-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCACAGCCATGCCCTGC
R:
GATCTCACAGTGCCTCCCAGT
Band lengths:
230-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains