BtaEX6019575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120775699-120777833:+
Coord C1 exon
chr3:120775699-120775812
Coord A exon
chr3:120776298-120776414
Coord C2 exon
chr3:120777717-120777833
Length
117 bp
Sequences
Splice sites
3' ss Seq
GACCGTCCTCTGCCCCACAGCGC
3' ss Score
9.79
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGGTCACGGCCACGCCCTGCAACATGAACACGCAGTGCCCCGACGGCGGCTACTGCATGGAGTACGGCGGGAGCTACCTGTGTGTCTGCCACGCCGACCACAACGTCAGCCACT
Seq A exon
CGCTGCCGTCGCCGTGTGACTCCGACCCCTGCTTCAATGGAGGTTCCTGTGACGCGCACGAAGACTCCTACACGTGCGAGTGCCCGCGGGGCTTCCACGGCCGCCACTGCGAGAAAG
Seq C2 exon
CCCGGCCGCGCCTGTGCAGCTCTGGGCCTTGCAGGAACGGAGGCACGTGTAAGGAGGCGGGCGGCGAGTACCACTGCGACTGCCCCTACCGCTTCACTGGCAGGCACTGCGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCCTGCAACATGAACA
R:
CAGTGCCTGCCAGTGAAGC
Band lengths:
213-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]