GgaEX6016368 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8187252-8188691:-
Coord C1 exon
chr18:8188600-8188691
Coord A exon
chr18:8188062-8188240
Coord C2 exon
chr18:8187252-8187327
Length
179 bp
Sequences
Splice sites
3' ss Seq
AACACAGTGTGGTCATGCAGGTG
3' ss Score
4.71
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGAAGTATTAGGGCTTCTGGGGCCCAACGGAGCTGGTAAGAGCACAGTCATCAAGATGATAGCTGGGGAGACAGCGCTGACAGCTGGGCAG
Seq A exon
GTGCTGCTGAGGAGCCGAGATGCCAAGCCGGGCTGGCCACAGGACCATGTGCTTGCCTACCTGGGGCACTGCCCACAGGAGGACCCACTCTGGCCAGACCTCACTGTGTATGAGCACCTGAAGGTCTACGCTGCTGTAAAGGGCGTGTGCAAGGAAGACATGGCCACTGTCATCAACAG
Seq C2 exon
AATAGTGAATGCTCTGCAGCTTCAAGACTATTTAAAAAAGCCAACCAGAAAGCTTCCTGCTGGGATAACCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'34-42,'34-41,35-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.4=100)
A:
PF0000522=ABC_tran=FE(40.1=100)
C2:
PF0000522=ABC_tran=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTAGGGCTTCTGGGGC
R:
CAGGAAGCTTTCTGGTTGGCT
Band lengths:
148-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]