RnoEX0004949 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98244086-98246959:-
Coord C1 exon
chr10:98246868-98246959
Coord A exon
chr10:98244630-98244790
Coord C2 exon
chr10:98244086-98244161
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGATGAACTTTTATCTATAGGTG
3' ss Score
8.76
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTGAGATTCTAGGATTGCTGGGACACAATGGAGCTGGCAAAAGTACATCTCTTAAAATGATAAGTGGAGACACAAAATCCACAGCTGGGCAG
Seq A exon
GTGCTACTGAAAGGGAGCAGAGAAGGGGACGCCCTGGGGTTCCTGGGGTACTGTCCTCAAGAGAACGCTCTGTGGCCCAACCTCACTGTGAAGGAGCACCTGGAGGTATTTGCTACAGTGTTGGGCCTGAGCAAAAGTCACGCTGCAGTCACCATTACAAG
Seq C2 exon
GTTGGCAGATGCGCTCCAGCTGCAGGACCAGCTGAAGTCTCCGGTGAAGACACTGTCAGAGGGAGTGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
PF0000522=ABC_tran=FE(37.6=100)
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTCTAGGATTGCTGGGACA
R:
TCTTCACTCCCTCTGACAGTGT
Band lengths:
162-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]