GgaEX6018320 @ galGal3
Exon Skipping
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5528253-5542055:+
Coord C1 exon
chr2:5528253-5528375
Coord A exon
chr2:5534128-5534409
Coord C2 exon
chr2:5542002-5542055
Length
282 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATTTCACTCAAGGTG
3' ss Score
7.85
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCTCCTTAATCAGCCTCATAGCCAACACTCTTGGATACTCCGAGATGGGTCCCATTAAATCCCTCAGGACCCTCCGAGCTCTGAGACCACTGAGAGCGTTGTCACGGTTTGAAGGGATGAGG
Seq A exon
GTGGTGGTCAATGCCCTTGTGGGAGCCATCCCTTCCATCATGAACGTTCTGCTCGTCTGCCTCATCTTCTGGCTCATCTTTAGCATCATGGGAGTCAACCTGTTTGCTGGGAAGTTTGGGAAGTGCATTAATAAGACAGAAGGAGATATGCCTTTAGACTCTAAAATTATTAACAACATGACTGACTGCATACTCTATAATGTTTCTGGCACATTTTACTGGACAAAAGTTAAAGTTAACTTTGACAACGTTGGCGCTGGGTACCTGGCTCTCCTGCAGGTG
Seq C2 exon
GCCACATTTAAAGGTTGGATGGATATTATGTATGCAGCAGTGGATTCACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTAATCAGCCTCATAGCCA
R:
CTCGTGAATCCACTGCTGCAT
Band lengths:
174-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]