GgaEX6018320 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5591483-5605286:+
Coord C1 exon
chr2:5591483-5591605
Coord A exon
chr2:5597359-5597640
Coord C2 exon
chr2:5605233-5605286
Length
282 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATTTCACTCAAGGTG
3' ss Score
7.85
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCTCCTTAATCAGCCTCATAGCCAACACTCTTGGATACTCCGAGATGGGTCCCATTAAATCCCTCAGGACCCTCCGAGCTCTGAGACCACTGAGAGCGTTGTCACGGTTTGAAGGGATGAGG
Seq A exon
GTGGTGGTCAATGCCCTTGTGGGAGCCATCCCTTCCATCATGAACGTTCTGCTCGTCTGCCTCATCTTCTGGCTCATCTTTAGCATCATGGGAGTCAACCTGTTTGCTGGGAAGTTTGGGAAGTGCATTAATAAGACAGAAGGAGATATGCCTTTAGACTCTAAAATTATTAACAACATGACTGACTGCATACTCTATAATGTTTCTGGCACATTTTACTGGACAAAAGTTAAAGTTAACTTTGACAACGTTGGCGCTGGGTACCTGGCTCTCCTGCAGGTG
Seq C2 exon
GCCACATTTAAAGGTTGGATGGATATTATGTATGCAGCAGTGGATTCACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'26-34,'26-33,28-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
ENSGALT00000031281fB11732
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTAATCAGCCTCATAGCCA
R:
CTCGTGAATCCACTGCTGCAT
Band lengths:
174-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]