DreEX6029429 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52298354-52305523:-
Coord C1 exon
chr2:52305401-52305523
Coord A exon
chr2:52302329-52302601
Coord C2 exon
chr2:52298354-52298407
Length
273 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTGTTGTGCAGGTT
3' ss Score
9.87
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGTCTTTGATTAGTTTGGTTGCGAACTCCCTTGGCTACTCTGATTTCGGGGCCATCAAGTCTTTGAGGACTCTCAGAGCTCTGCGACCCCTGAGGGCCCTATCTAGATTTGAAGGAATGAGG
Seq A exon
GTTGTAGTGAATGCACTGATCGGGGCCATCCCGTCCATCATGAATGTACTGCTGGTGTGTCTGATCTTTTGGCTCATATTTAGTATCATGGGCGTCAATCTCTTTGCTGGGAAATTTGGCAAATGTGTCAATAGGACAGGATTCATCCACAATGCAAGCATTGTCAACAACAAGACAGAGTGCCTGTCCATGAATGATACACAGTTCTACTGGACCAAGGTGAAAGTCAACTTCGACAACGTGGGACTCGGATACCTCTCACTTCTGCAGGTG
Seq C2 exon
GCTACATTCAAAGGCTGGATGGAAATCATGTATGCCGCCGTTGATTCCCGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'23-22,'23-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.7=100)
A:
PF0052026=Ion_trans=FE(39.8=100)
C2:
PF0052026=Ion_trans=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTTGATTAGTTTGGTTGCGA
R:
GGGAATCAACGGCGGCATAC
Band lengths:
172-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]