BtaEX6093437 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12026243-12031412:-
Coord C1 exon
chr22:12031290-12031412
Coord A exon
chr22:12028932-12029213
Coord C2 exon
chr22:12026243-12026296
Length
282 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCTGCCCACTTGAGGTT
3' ss Score
4.1
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCTCGCTGATCAGCCTGGTGGCCAACGCCCTGGGCTTTGCTGAGATGGGCCCCATCAAGTCACTGCGGACCTTGCGTGCGCTCAGACCCCTGCGAGCCCTGTCACGATTTGAGGGCATGAGG
Seq A exon
GTTGTGGTTAACGCCCTGGTGGGCGCCATCCCATCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGCGTGAACCTCTTCGCGGGGAAGTTTGGGAGATGCATCAACCAGACCGAGGGAGACCTGCCCTTGAACTATACCATCGTGAACAACAAGAGCGACTGTGAGTCTTTCAACGTGACTGGCGAATTGTACTGGACCAAGGTGAAGGTCAACTTTGACAACGTGGGGGCCGGGTACCTGGCCCTTCTGCAGGTG
Seq C2 exon
GCAACATTTAAAGGCTGGATGGACATCATGTATGCAGCTGTAGACTCCAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'25-30,'25-28,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCTTTGCTGAGATGG
R:
CCCCCTGGAGTCTACAGCTG
Band lengths:
148-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]