GgaEX6025273 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5651394-5652194:+
Coord C1 exon
chr23:5651394-5651556
Coord A exon
chr23:5651820-5651903
Coord C2 exon
chr23:5652087-5652194
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTCTGAATTTTTTTTGAAGGCT
3' ss Score
5.85
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCACACGGAGCTGGAGAGCATCCAGGAGGTGCTGAGCGATTACCGCCAGTGCCACAGGGCCCTCATCCAGTGGATCGAGGAGATCACCGCCCAGCAGGAGCTGATGAAACCCGGGCAGGCGGAGGACAGCCGGGTGCTGTCAGAGCAGCTGAGCCAGCAAACG
Seq A exon
GCTTTGGCTGCAGAAATCGAGAAGAATCAAGCCAAGCTGGACCAGTGTCAGAAGTTCTCCCAGCAGTACTCAGCTGCTGTCAAG
Seq C2 exon
GACTATGAGCTGCAGCTCATGACGTACCGCGCATTTGTGGAGTCGCAGCAGAAGTCCCCCATGAAGCGCCGGCGGATGCTGTCCTCCTCGGATGCCATCACACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCATCCAGTGGATCGAGG
R:
CTTCATGGGGGACTTCTGCTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]