GgaEX6025273 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5336218-5337018:+
Coord C1 exon
chr23:5336218-5336380
Coord A exon
chr23:5336644-5336727
Coord C2 exon
chr23:5336911-5337018
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTCTGAATTTTTTTTGAAGGCT
3' ss Score
5.85
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCACACGGAGCTGGAGAGCATCCAGGAGGTGCTGAGCGATTACCGCCAGTGCCACAGGGCCCTCATCCAGTGGATCGAGGAGATCACCGCCCAGCAGGAGCTGATGAAACCCGGGCAGGCGGAGGACAGCCGGGTGCTGTCAGAGCAGCTGAGCCAGCAAACG
Seq A exon
GCTTTGGCTGCAGAAATCGAGAAGAATCAAGCCAAGCTGGACCAGTGTCAGAAGTTCTCCCAGCAGTACTCAGCTGCTGTCAAG
Seq C2 exon
GACTATGAGCTGCAGCTCATGACGTACCGCGCATTTGTGGAGTCGCAGCAGAAGTCCCCCATGAAGCGCCGGCGGATGCTGTCCTCCTCGGATGCCATCACACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'41-43,'41-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCATCCAGTGGATCGAGG
R:
CTTCATGGGGGACTTCTGCTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]