BtaEX6018664 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107312674-107316465:-
Coord C1 exon
chr3:107316303-107316465
Coord A exon
chr3:107315500-107315583
Coord C2 exon
chr3:107312674-107312781
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGATGTTTTGGTTCCTAGGAG
3' ss Score
8.9
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCAATCTGAGCTAGAAAGTATCCAGGAAGTCCTGGGAGATTACCGAGCCTGCCATGGAACTCTCATCAAATGGATTGAGGAAACCACTGCCCAGCAGGAAATGATGAAGCCAGGCCAGGCTGAGGACAGCAGAGTACTCTCCGAGCAGCTCAGCCAGCAGACG
Seq A exon
GAGCTGTTTGCAGAAATTGAGAGAAATCAGACGAAACTGGACCAGTGTCAAAAATTTTCCCAGCAATACTCCACCATTGTAAAG
Seq C2 exon
GACTATGAATTACAGCTGATGACATACAAGGCCTTTGTGGAATCGCAGCAGAAATCCCCGGGCAAGCGCCGTCGCATGCTGTCCTCTTCAGATGCCATCACGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCCATGGAACTCTCATC
R:
GGGATTTCTGCTGCGATTCCA
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]