RnoEX6023202 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141171182-141172838:-
Coord C1 exon
chr5:141172676-141172838
Coord A exon
chr5:141171789-141171872
Coord C2 exon
chr5:141171182-141171289
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGGGATACTTCGGTTTCTAGGAA
3' ss Score
6.75
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCAGTCGGAGGTAGAAAGTATCCAGGAAGTTCTGAGAGATTACCGAGCCTGCCATGGGACTCTCATCAAGTGGATTGAGGAAACCACTGCCCAGCAGGAAATGATGAAGCCGGGCCAGGCAGAGGATAGCAGAGTGCTGTCTGAGCAGCTTAGTCAGCAGACG
Seq A exon
GAACTGTTTGCTGAGATTGAGAGAAATCAGACAAAACTGGACCAATGTCAAAAACTTTCCCAGCAGTACTCCACTACTGTAAAG
Seq C2 exon
GACTATGAGTTGCAGCTTATGACGTACAAGGCCTTCGTGGAGTCACAGCAGAAATCTCCGGGCAAGCGCCGTCGCATGATTTCCTCTTCAGATGCCATCACACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-'52-51,'52-50,53-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTACCGAGCCTGCCAT
R:
TGACTCCACGAAGGCCTTGTA
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]