GgaEX6042498 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21090570-21093275:+
Coord C1 exon
chr7:21090570-21090863
Coord A exon
chr7:21091582-21091929
Coord C2 exon
chr7:21093143-21093275
Length
348 bp
Sequences
Splice sites
3' ss Seq
CAAATTTTGTTTGCCTACAGTCT
3' ss Score
6.82
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
GCAGCGGCGGCAGTTACAGCATCCGCAGAGTCCAGGGAACCCAGCGCTGCGGGAGGAGCAGGTGGGCTTTCAGAAAGTTCCTCAGAGGCTTCCAAATTGAGCTCAAAGAGTGCCAAAGAGAGGAGAAATAGAAGGAAAAAAAGAAAACAGAAAGAACAGTCTGGAGGAGAGGAAAAAGATGAAGATGAATTTCACAAGTCTGAATCAGAAGACAGCATCAGAAGAAAAGGTTTCCGGTTATCTATTGAAGGCAATAGACTGACATATGAAAAGAAATACTCTTCTCCACATCAG
Seq A exon
TCTTTGCTGAGCATTCGTGGCTCCCTGTTTTCCCCAAGGCGCAACAGCAGAACCAGTCTTTTCAGCTTCAGAGGTAGAGCAAAGGATATAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGATAGCAGAAGAGATTCTCTCTTTGTGCCGCGCAGACACGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGATGCTGGCAGTGTTTCCAGTGAATGGGAAGATGCACAGCACTGTGGATTGCAATGGGGTGGTTTCCCTGGTTGGTGGACCATCTGTTCCTACATCGCCTGTTGGACAGCTTCTGCCAGAG
Seq C2 exon
GGCACCACTACAGAGACAGAAATGAGGAAGAGAGTATCAGGCTCTTTCCATGTTTCTATGGACTATCTGGAAGATCCAGCTTTAAGAGAGAGAGCAATGAGCATTGCTAGCATCCTTACGAACACTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=0.552 C2=0.228
Domain overlap (PFAM):
C1:
PF0253517=Zip=PD(47.1=82.7),PF119333=DUF3451=PU(29.7=71.4)
A:
PF119333=DUF3451=FE(51.1=100)
C2:
PF119333=DUF3451=PD(15.7=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGGCTTTCAGAAAGT
R:
CGTAAGGATGCTAGCAATGCTCA
Band lengths:
357-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]