MmuEX6101748 @ mm9
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66161369-66164243:-
Coord C1 exon
chr2:66163959-66164243
Coord A exon
chr2:66162661-66163008
Coord C2 exon
chr2:66161369-66161501
Length
348 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTTCAAACTTTCAGTCT
3' ss Score
7.37
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
CAGGCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGTTCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAGAGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAG
Seq A exon
TCTCTGTTAAGCATTCGTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCTTTTCAGCTTTAGAGGGCGAGCCAAGGATGTGGGGTCTGAGAATGACTTTGCTGATGATGAACACAGCACCTTTGAGGATAATGAGAGCCGTAGAGACTCACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAATGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAGCACGGTGGATTGCAATGGTGTGGTTTCCTTGGTTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGACAGCTTCTGCCAGAG
Seq C2 exon
GGAACAACCACTGAAACTGAGATGAGAAAGAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTTTCTAGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.643 C2=0.218
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(50.5=100),PF119333=DUF3451=PU(31.1=73.7)
A:
PF0293211=Neur_chan_memb=PD(14.5=23.3),PF119333=DUF3451=FE(51.1=100)
C2:
PF119333=DUF3451=PD(16.4=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGGCTCTCAGATAGCTC
R:
GCTATGCTCATTGCCCTTTGC
Band lengths:
342-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: