RnoEX0078532 @ rn6
Exon Skipping
Gene
ENSRNOG00000053122 | Scn1a
Description
sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol;Acc:69364]
Coordinates
chr3:52434549-52437548:-
Coord C1 exon
chr3:52437264-52437548
Coord A exon
chr3:52436011-52436358
Coord C2 exon
chr3:52434549-52434681
Length
348 bp
Sequences
Splice sites
3' ss Seq
CGTGCGTTTCAAACTTTCAGTCT
3' ss Score
7.2
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
CAGGCGGCGGCAGCAACAGCATCAGAACATTCCAGGGAGCCCAGTGCAGCGGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCCAAGTTGAGTTCAAAGAGCGCTAAAGAAAGGCGGAATCGGAGGAAAAAAAGAAAACAGAAAGAGCAGTCTGGAGGGGAAGAGAAAGATGATGATGAATTCCACAAATCCGAGTCCGAAGATAGCATCAGGAGGAAGGGCTTCCGCTTCTCCATAGAAGGGAACAGACTGACCTATGAAAAGAGGTACTCTTCCCCACATCAG
Seq A exon
TCTCTGTTGAGCATTCGCGGCTCACTGTTTTCCCCGAGACGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGGCGAGCGAAGGACGTGGGGTCTGAGAATGATTTTGCGGACGATGAGCACAGCACCTTCGAGGACAATGAGAGCAGGAGAGACTCTCTGTTTGTTCCCCGAAGACATGGAGAGCGACGCAACAGTAACCTCAGCCAAACCAGCAGATCCTCCCGAATGCTGGCGGGGCTTCCAGCAAACGGGAAGATGCACAGCACAGTGGATTGCAATGGTGTGGTTTCCTTGGTGGGCGGACCCTCGGTTCCGACATCGCCAGTTGGACAGCTTCTGCCAGAG
Seq C2 exon
GGAACAACTACTGAAACTGAGATGAGAAAGAGGAGGTCAAGTTCTTTCCATGTTTCCATGGACTTTCTTGAGGATCCTTCCCAGAGGCAAAGGGCAATGAGCATTGCCAGCATCTTAACAAATACAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053122-'16-21,'16-20,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=0.708 C2=0.244
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(51.9=100),PF119333=DUF3451=PU(31.1=73.7)
A:
PF0293211=Neur_chan_memb=PD(12.2=19.0),PF119333=DUF3451=FE(51.1=100)
C2:
PF119333=DUF3451=PD(16.4=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACATTCCAGGGAGCCC
R:
TTTGCCTCTGGGAAGGATCCT
Band lengths:
355-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]