GgaEX6043829 @ galGal3
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
NA
Coordinates
chr8:6931194-6932165:+
Coord C1 exon
chr8:6931194-6931291
Coord A exon
chr8:6931879-6931960
Coord C2 exon
chr8:6932048-6932165
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTCCTTCCTCCACAGGTT
3' ss Score
12.63
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GATGCACTGGTTTGGGCCATGAGAAACCAGCTGTGGGGCCACGCTCTCTTCCTGTCCAGCAAGATGGATCCTCGCACCTACAGTTGGGTGCTCAGTGG
Seq A exon
GTTCACCAGCACTCTGGCCACCAACGACCCACTGCAGACCTTCTTCCAGCTCATGTCAGGAAGGATCCCGCAGGCAGCGCAG
Seq C2 exon
AGCTGCGGGGATGCCAAGTGGGGAGACTGGAGGCCCCACTTGGCTGTGCTGCTGTCCAACAAGGTGGGAGACATGGAGCTGAACCACCGGGCCATCGTCACCATGGGAGACACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.3=100)
A:
PF129312=Sec16_C=FE(11.2=100)
C2:
PF129312=Sec16_C=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGGGCCATGAGAAACC
R:
CCATGTCTCCCACCTTGTTGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]