MmuEX6028537 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159473997-159481255:+
Coord C1 exon
chr1:159473997-159474094
Coord A exon
chr1:159476330-159476411
Coord C2 exon
chr1:159481138-159481255
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCTTTCTCGTTACAGTTT
3' ss Score
10.28
5' ss Seq
ACGGTACTC
5' ss Score
4.58
Exon sequences
Seq C1 exon
GAGGCTTTGGAGTGGGCTATGAAGAACCACTTGTGGGGACATGCCTTGTTCCTAGCCAGTAAGATGGACCCAAGGACCTACAACTGGGTCATGAGTGG
Seq A exon
TTTCACCAGTACGCTGGCGCTCAATGACCCTCTGCAGACCCTCTTCCAGCTCATGTCAGGAAGGATTCCACAAGCAGCCACG
Seq C2 exon
GTTTGTGGAGACAAACAGTGGGGAGACTGGCGGCCCCACTTGGCTGTGATCCTGTCAAATCAGGCTGGAGATACAGAGTTGTACCAGCGAGCGATTGTCAGCATGGGGGATACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.0=100)
A:
PF129312=Sec16_C=FE(11.0=100)
C2:
PF129312=Sec16_C=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGGGACATGCCTTGTTC
R:
GACAATCGCTCGCTGGTACAA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: