BtaEX0031734 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60766747-60774292:-
Coord C1 exon
chr16:60774195-60774292
Coord A exon
chr16:60771758-60771839
Coord C2 exon
chr16:60766747-60766864
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCGGTCCCCTCTCTCTGCAGCTT
3' ss Score
11.51
5' ss Seq
ACGGTACCC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GAAGCCTTGGAGTGGGCCATGAAGAACCATTTGTGGGGCCATGCTTTGTTCCTCTCCAGCAAGATGGACCCAAGGACCCACAGCTGGGTCATGAGTGG
Seq A exon
CTTCACCAGCACACTGGCGCTCAACGATCCACTGCAGACTCTCTTCCAGCTCATGTCGGGAAGGATCCCACAGGCAGCCACG
Seq C2 exon
TGTTGTGGGGACAAGCAGTGGGGAGACTGGAGGCCACACTTGGCAGTGATTCTGTCGAATCAGGGTGGGGACCCGGAGCTGTACCAGCGCACGATTGTCGCCATGGGGGACACCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.1=100)
A:
PF129312=Sec16_C=FE(11.0=100)
C2:
PF129312=Sec16_C=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGTGGGGCCATGCTTTG
R:
GACAATCGTGCGCTGGTACA
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development