DreEX6021764 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23809405-23816940:-
Coord C1 exon
chr6:23816843-23816940
Coord A exon
chr6:23816158-23816239
Coord C2 exon
chr6:23809405-23809522
Length
82 bp
Sequences
Splice sites
3' ss Seq
GAATGTTTATGTTTTGACAGATT
3' ss Score
6.4
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GAGGCGCTGGAGTCGGCCATGCAGAGTGGTCTGTGGGGTCATGCCTTATTTTTGGCCAGCAAAATGGACAGCAGGTCTTACAACACAGTGTTGAGCAG
Seq A exon
ATTTACAGGCAGTCTGACTCCCAGTGACCCTCTGCAAACTCTATTCCAGCTGCTCTCTGGACGGATTCCAGCTGTATCCATG
Seq C2 exon
TCCTGGAGTAGTGAGAAGTGGGGAGACTGGCGACCACACCTGGCTGTTATGCTGTCCAATGAGACAACAGACCCTGTCATACATCACAGGTCCATCATCGCCATGGGCGATACACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-'12-15,'12-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.8=100)
A:
PF129312=Sec16_C=FE(10.8=100)
C2:
PF129312=Sec16_C=FE(15.6=100)
Main Skipping Isoform:
ENSDART00000160547fB5441
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGTCTGTGGGGTCATG
R:
GGCGATGATGGACCTGTGATG
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]