MmuEX6099737 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26281287-26282068:-
Coord C1 exon
chr2:26281971-26282068
Coord A exon
chr2:26281600-26281681
Coord C2 exon
chr2:26281287-26281404
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTCTGTACATGTAGGTT
3' ss Score
8.02
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCATGCTCTTCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAG
Seq A exon
GTTTGCCAACAGTCTTCCAATCAATGACCCCCTGCAGACTGTCTACCAGCTCATGTCTGGACGGATGCCTGCTGCATCCACG
Seq C2 exon
TGTTGTGGCGATGAGAAGTGGGGAGATTGGAGGCCACATCTTGCAATGGTTTTGTCCAACCTGAACAACAACATGGATGTTGAATCTAGGACCATGGCTACGATGGGTGATACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.1=100)
A:
PF129312=Sec16_C=FE(10.2=100)
C2:
PF129312=Sec16_C=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGCTCTTCTGCTTGCA
R:
CCCATCGTAGCCATGGTCCTA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: