BtaEX6047209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103949856-103950678:-
Coord C1 exon
chr11:103950581-103950678
Coord A exon
chr11:103950113-103950194
Coord C2 exon
chr11:103949856-103949973
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTAACATCTGCTCAGGTT
3' ss Score
6.48
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GACGCCTTAGAGTCTGCAATGAAGAATGGCTTGTGGGGTCACGCCCTGCTACTTGCCAGTAAGATGGATAGCCGGACGCACGCCAGAGTCATGACCAG
Seq A exon
GTTCGCCAACAGCCTTCCAATCAACGACCCCCTGCAGACTGTCTACCAGCTGATGTCTGGGCGGATGCCGGCCGCGTCCACG
Seq C2 exon
TGCTGTGGGGATGAGAAGTGGGGAGACTGGCGGCCACACCTGGCCATGATCTTGTCCAACCTGAGCAGCAGCGTGGACGTGGAGTCTCGGGCCATGGCCACGATGGGCGACACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.2=100)
A:
PF129312=Sec16_C=FE(10.3=100)
C2:
PF129312=Sec16_C=FE(14.8=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTTAGAGTCTGCAATGA
R:
GCTGCTCAGGTTGGACAAGAT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]