GgaEX0002967 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8551409-8552329:+
Coord C1 exon
chr17:8551409-8551506
Coord A exon
chr17:8551941-8552022
Coord C2 exon
chr17:8552212-8552329
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTGTATGATGTCTCTCTAGATT
3' ss Score
8.53
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GATGCTTTGGAATCAGCCATGAAGCATGGCTTATGGGGTCATGCTCTGCTACTTGCCAGCAAGATGGACAATAGAACGCATGCAAGAGTTATGACCAG
Seq A exon
ATTTGCCAACAGTCTCCCAATTAATGACCCTCTGCAGACTGTTTACCAGCTCATGTCTGGAAGGATGCCAGCTGCATCCACG
Seq C2 exon
TGCTGTGGAGATGAGAAATGGGGAGACTGGAGGCCACATCTAGCAATGGTGTTATCCAACTTGACTAATAACGTGGACTTGGAATCCCGGACCATTGCTACCATGGGAGACACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(11.9=100)
A:
PF129312=Sec16_C=FE(10.0=100)
C2:
PF129312=Sec16_C=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTCATGCTCTGCTACT
R:
GTAGCAATGGTCCGGGATTCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]