HsaEX6064031 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136459757-136461274:-
Coord C1 exon
chr9:136461177-136461274
Coord A exon
chr9:136460042-136460086
Coord C2 exon
chr9:136459757-136459874
Length
45 bp
Sequences
Splice sites
3' ss Seq
CAATCAACGACCCTCTGCAGACA
3' ss Score
3.48
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATGCTTTGGAGTCTGCAATGAAGAATGGCCTGTGGGGTCACGCTCTGCTACTTGCAAGTAAGATGGACAGCCGGACACACGCCCGAGTCATGACCAG
Seq A exon
ACAGTCTACCAGCTCATGTCCGGACGGATGCCTGCCGCGTCCACG
Seq C2 exon
TGCTGTGGAGACGAGAAATGGGGAGATTGGAGGCCGCACCTCGCCATGGTCTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACGATGGCTACCATGGGCGACACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396-'34-37,'34-36,35-37
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.2=100)
A:
PF129312=Sec16_C=FE(10.3=100)
C2:
PF129312=Sec16_C=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAGAATGGCCTGTGGGG
R:
AAGTTGGACAAGACCATGGCG
Band lengths:
143-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains