GgaEX0002967 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7862313-7863233:+
Coord C1 exon
chr17:7862313-7862410
Coord A exon
chr17:7862845-7862926
Coord C2 exon
chr17:7863116-7863233
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTGTATGATGTCTCTCTAGATT
3' ss Score
8.53
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GATGCTTTGGAATCAGCCATGAAGCATGGCTTATGGGGTCATGCTCTGCTACTTGCCAGCAAGATGGACAATAGAACGCATGCAAGAGTTATGACCAG
Seq A exon
ATTTGCCAACAGTCTCCCAATTAATGACCCTCTGCAGACTGTTTACCAGCTCATGTCTGGAAGGATGCCAGCTGCATCCACG
Seq C2 exon
TGCTGTGGAGATGAGAAATGGGGAGACTGGAGGCCACATCTAGCAATGGTGTTATCCAACTTGACTAATAACGTGGACTTGGAATCCCGGACCATTGCTACCATGGGAGACACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(11.9=100)
A:
PF129312=Sec16_C=FE(10.0=100)
C2:
PF129312=Sec16_C=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTCATGCTCTGCTACT
R:
GTAGCAATGGTCCGGGATTCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]