HsaEX6064031 @ hg19
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:29006]
Coordinates
chr9:139354209-139355726:-
Coord C1 exon
chr9:139355629-139355726
Coord A exon
chr9:139354494-139354575
Coord C2 exon
chr9:139354209-139354326
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTATGTCTGCCTAGGTT
3' ss Score
8.64
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATGCTTTGGAGTCTGCAATGAAGAATGGCCTGTGGGGTCACGCTCTGCTACTTGCAAGTAAGATGGACAGCCGGACACACGCCCGAGTCATGACCAG
Seq A exon
GTTTGCTAACAGCCTCCCAATCAACGACCCTCTGCAGACAGTCTACCAGCTCATGTCCGGACGGATGCCTGCCGCGTCCACG
Seq C2 exon
TGCTGTGGAGACGAGAAATGGGGAGATTGGAGGCCGCACCTCGCCATGGTCTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACGATGGCTACCATGGGCGACACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.3=100)
A:
PF129312=Sec16_C=FE(10.3=100)
C2:
PF129312=Sec16_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAGAATGGCCTGTGGGG
R:
GGTAGCCATCGTCCTGGACTC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)