RnoEX0078957 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3872479-3873229:-
Coord C1 exon
chr3:3873132-3873229
Coord A exon
chr3:3872778-3872859
Coord C2 exon
chr3:3872479-3872596
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCATTCTCTGTACATGTAGGTT
3' ss Score
8.02
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCACGCCCTGCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAG
Seq A exon
GTTTGCCAACAGTCTTCCGATCAATGACCCCCTGCAGACTGTCTACCAGCTCATGTCTGGACGGATGCCTGCTGCATCCACG
Seq C2 exon
TGTTGTGGAGATGAGAAATGGGGAGATTGGAGGCCACATCTTGCAATGGTTTTGTCCAACCTGAACAACAACATGGATGTGGAATCTCGGACCATGGCTACCATGGGTGATACCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'20-20,'20-19,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(12.1=100)
A:
PF129312=Sec16_C=FE(10.2=100)
C2:
PF129312=Sec16_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGCTTATGGGGTCACGC
R:
TGGTAGCCATGGTCCGAGATT
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]