GgaEX6043829 @ galGal4
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
protein transport protein Sec16B [Source:RefSeq peptide;Acc:NP_001026440]
Coordinates
chr8:6602623-6603594:+
Coord C1 exon
chr8:6602623-6602720
Coord A exon
chr8:6603308-6603389
Coord C2 exon
chr8:6603477-6603594
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTCCTTCCTCCACAGGTT
3' ss Score
12.63
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GATGCACTGGTTTGGGCCATGAGAAACCAGCTGTGGGGCCACGCTCTCTTCCTGTCCAGCAAGATGGATCCTCGCACCTACAGTTGGGTGCTCAGTGG
Seq A exon
GTTCACCAGCACTCTGGCCACCAACGACCCACTGCAGACCTTCTTCCAGCTCATGTCAGGAAGGATCCCGCAGGCAGCGCAG
Seq C2 exon
AGCTGCGGGGATGCCAAGTGGGGAGACTGGAGGCCCCACTTGGCTGTGCTGCTGTCCAACAAGGTGGGAGACATGGAGCTGAACCACCGGGCCATCGTCACCATGGGAGACACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.3=100)
A:
PF129312=Sec16_C=FE(11.2=100)
C2:
PF129312=Sec16_C=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGGGCCATGAGAAACC
R:
CCATGTCTCCCACCTTGTTGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]