GgaEX6047711 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29708816-29709187:+
Coord C1 exon
chrUn_random:29708816-29708851
Coord A exon
chrUn_random:29708961-29709050
Coord C2 exon
chrUn_random:29709143-29709187
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCCCCCCATGCCCCCCGCAGGGG
3' ss Score
9.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGAGATCCCGGCATCAATGGGATCAAAGGGGAGAAG
Seq A exon
GGGGACTCCTGCCTGTCCTGTGACAGCCGTGTCCTCGCTGCGCTGCTGCGGGAACTCCCCGAGGGGCGTGAGAGCGAACTGGGATCACTG
Seq C2 exon
GACAAAGCAATCCTTCCTGGGCTGGCTGGCATCAAGGGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022292-'10-12,'10-10,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.533 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(36.7=100)
A:
PF0139113=Collagen=PD(16.7=16.7),PF0139113=Collagen=PU(11.3=26.7)
C2:
PF0139113=Collagen=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCGGCATCAATGGGAT
R:
CTTCTCGCCCTTGATGCCAG
Band lengths:
79-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]