HsaEX6029689 @ hg38
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr1:31688467-31689085:-
Coord C1 exon
chr1:31689050-31689085
Coord A exon
chr1:31688861-31688971
Coord C2 exon
chr1:31688467-31688502
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTTCTTTCCCCAGGGG
3' ss Score
12.55
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGAGACCCTGGCATCCAAGGCATCAAAGGAGAGAAG
Seq A exon
GGGGAGCCCTGCTTGTCCTGCAGCTCGGTTGTAGGGGCCCAGCATCTTGTGTCCTCCACAGGGGCCAGTGGAGATGTGGGTTCCCCTGGCTTTGGTCTGCCTGGCCTTCCG
Seq C2 exon
GGTAGAGCTGGGGTTCCAGGGCTGAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'38-40,'38-38,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.730 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(25.4=43.2)
C2:
PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains