BtaEX6012368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122571049-122571675:+
Coord C1 exon
chr2:122571049-122571084
Coord A exon
chr2:122571160-122571270
Coord C2 exon
chr2:122571631-122571675
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCTTCCTTCCCCAGGGG
3' ss Score
12.85
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGAGACCCTGGCATCCAAGGCCTCAAAGGAGAGAAG
Seq A exon
GGGGAGTCCTGCTCGTCCTGCAGCTTTGCCGTAGCGGCCCAGCATCTCCAGCCTTCTGCAGGGGCCAAAGGCGATGTGGGCCCTCCTGGCCTGGGTTTGCCAGGTCTTCCG
Seq C2 exon
GGGAAAGCTGGGGCCCCAGGGCCAACAGGGCTGAAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.919 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.4=100)
A:
PF0139113=Collagen=PD(12.8=16.2),PF0139113=Collagen=PU(25.7=48.6)
C2:
PF0139113=Collagen=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]