RnoEX0022882 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148271811-148272311:+
Coord C1 exon
chr5:148271811-148271846
Coord A exon
chr5:148271922-148272032
Coord C2 exon
chr5:148272267-148272311
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTCTTCCTTCCCTAGGGG
3' ss Score
12.48
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGAGATCCAGGCATCCAAGGAATGAAAGGAGAGAAG
Seq A exon
GGGGAACCCTGCTCATCCTGCAGTTCAGGTGTTGGGGCCCAGCATCTTGGGCCCTCCACTGGGGTCAATGAAGACATGGGCTCCCCTGTCCATGGTTTACCTGGCCTTCCG
Seq C2 exon
GGCAAACCTGGAATTCCCGGGCCAAGAGGCATGAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475-'38-40,'38-38,39-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.8=100)
A:
PF0139113=Collagen=PD(24.5=35.1),PF0139113=Collagen=PU(13.3=21.6)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]