GgaEX7006021 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19449554-19456876:+
Coord C1 exon
chr7:19449554-19449727
Coord A exon
chr7:19454584-19454706
Coord C2 exon
chr7:19456595-19456876
Length
123 bp
Sequences
Splice sites
3' ss Seq
TAATTTGTTTCCTTTTATAGGTC
3' ss Score
11.5
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GCTTTTGAAGATATATATATTGAACAGCGTAAAACTATAAAGACCATGCTGGAATATGCGGACAAAGTTTTTACATACATTTTCATTTTGGAAATGCTTTTAAAATGGGTAGCATATGGTTTTCAAATATATTTTACTAATGCCTGGTGCTGGTTGGACTTTCTGATTGTTGAT
Seq A exon
GTCTCATTGGTTAGTTTAATAGCCAATGCTTTGGGCTATTCTGAACTTGGTGCCATTAAATCGCTTCGGACGTTAAGAGCTTTAAGACCTTTAAGAGCCTTGTCACGATTTGAAGGAATGAGG
Seq C2 exon
GTGGTTGTAAATGCTCTTGTAGGAGCAATTCCATCTATCATGAATGTATTGCTGGTTTGTCTTATATTCTGGCTCATCTTCAGCATCATGGGAGTAAATCTCTTTGCTGGAAAATTCTATCACTGTGTCAACACCACAACAGGCGAGATGTTTGATGTCAGCGATGTCAACAATTATACTCAGTGTGAGGAACTCATAAAAAACAATCAAAGTGCCCGCTGGAAAAATGTGAAAGTAAACTTTGATAATGTAGGAGCTGGGTATCTTGCTCTGCTTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGGTTGGACTTTCTG
R:
TTTCCAGCGGGCACTTTGATT
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]