RnoEX0078563 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51542121-51555492:-
Coord C1 exon
chr3:51555319-51555492
Coord A exon
chr3:51545854-51545976
Coord C2 exon
chr3:51542121-51542393
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGTTTATTTTCCATCTATAGGTT
3' ss Score
9.61
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTTGAGGATATATACATTGAGCAACGAAAGACGATCAAGACCATGCTGGAGTATGCAGACAAGGTCTTCACGTACATCTTCATCCTGGAGATGCTCCTCAAATGGGTGGCCTATGGATTTCAAACCTATTTCACCAATGCCTGGTGCTGGTTGGACTTCCTGATCGTTGAT
Seq A exon
GTTTCTTTGGTTAGCCTGGTAGCCAATGCTCTTGGTTACTCAGAACTTGGTGCCATCAAATCCCTACGGACACTGAGAGCTCTGAGGCCACTCCGAGCCTTATCCCGCTTTGAAGGCATGAGG
Seq C2 exon
GTGGTTGTGAATGCTCTTGTTGGTGCAATTCCCTCCATCATGAATGTGTTATTGGTGTGTCTCATCTTCTGGCTGATTTTTAGCATCATGGGTGTGAATCTGTTTGCTGGAAAGTTCTATCACTGTGTTAACACGACAACAGGCAACATGTTTGAAATAAAAGAAGTGAACAATTTCAGTGACTGTCAGGCTCTTGGCAAGCAAGCCCGGTGGAAGAATGTGAAAGTCAACTTTGACAACGTTGGGGCTGGCTACCTGGCATTGCTGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'32-31,'32-30,35-31
Average complexity
S
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.3=67.2)
A:
PF0052026=Ion_trans=FE(17.7=100)
C2:
PF0052026=Ion_trans=FE(39.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTTGGACTTCCTGATCG
R:
TTTCACATTCTTCCACCGGGC
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]