MmuEX6101694 @ mm10
Exon Skipping
Gene
ENSMUSG00000057182 | Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65469926-65482324:-
Coord C1 exon
chr2:65482151-65482324
Coord A exon
chr2:65472279-65472401
Coord C2 exon
chr2:65469926-65470198
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGTTTATTTTCCATCTACAGGTT
3' ss Score
9.82
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTTGAAGATATATACATTGAGCAACGGAAGACCATCAAAACCATGCTGGAGTATGCTGACAAAGTCTTCACTTACATCTTCATCCTGGAAATGCTCCTCAAATGGGTGGCCTATGGATTTCAAACCTATTTCACCAATGCCTGGTGCTGGTTGGACTTCTTGATTGTTGAT
Seq A exon
GTTTCTTTGGTTAGCCTGGTGGCCAACGCTCTTGGCTATTCAGAACTTGGTGCCATCAAATCCCTACGGACCCTGAGAGCTCTGAGGCCGCTCCGAGCCTTATCCCGCTTTGAAGGCATGAGG
Seq C2 exon
GTGGTTGTGAACGCTCTTGTTGGTGCAATCCCCTCCATCATGAATGTGCTACTGGTGTGCCTCATCTTCTGGTTAATCTTTAGTATCATGGGTGTGAATCTGTTTGCTGGAAAGTTCTATCACTGTGTTAACATGACAACGGGCAGCATGTTCGACATGAGTGAAGTCAACAATTTCAGCGACTGTCAGGCTCTTGGCAAGCAAGCCCGATGGAAGAATGTGAAAGTCAACTTTGACAATGTTGGGGCTGGCTACCTGGCATTGCTGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057182-'38-34,'38-33,40-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.3=67.2)
A:
PF0052026=Ion_trans=FE(17.7=100)
C2:
PF0052026=Ion_trans=FE(39.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGGTTGGACTTCTTG
R:
CATTCTTCCATCGGGCTTGCT
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types