GgaEX7011853 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:94998-98367:-
Coord C1 exon
chrLGE22C19W28_E50C23:98080-98367
Coord A exon
chrLGE22C19W28_E50C23:96968-97327
Coord C2 exon
chrLGE22C19W28_E50C23:94998-95133
Length
360 bp
Sequences
Splice sites
3' ss Seq
CCTTCATTCCCCCCTCCCAGTCT
3' ss Score
8.45
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GCTGCTGCCATGGTCACTTCTGCAGGGACGGTCTCTGAGGATGCTGTGGAAGATGATGGTGGTGGGAGGATGTCTCGGAGCTCATCAGAGATCTCTAAACTGAGTTCCAAGAGTGCCAAAGAGCGCCGTAACCGGAGGAAGAAGCGGAAGGACAAAGAGCTGTCGGAAGGGGAGGAGAAGGGCGACAACGAGAAAGTGTTCAAGTCTGAATCAGAGGATGGCATGAGGAGAAAAGCCTTCAGGCTGCCAGATAACAGGATAGGAAGAAAGTTTTCCATCATGAACCAG
Seq A exon
TCTCTCCTCAGCATCCCGGGCTCCCCTTTCCTCTCCCGACACAACAGCAAGAGCAGCATCTTCAGCTACAAGGGCCGATTCCGCGACCCGGGCTCGGAGAACGAATTCGCCGACGACGAACACAGCACGGTGGAGGAGAGCGAAGGCCGCAGGGATTCCCTCTTCATCCCCATCCGCGGCCGCGACCGACGGAGCAGCTACAGCGGATACAGCGGCTACAGCCAGGGCAGCCGCTCCTCGCGGATATTCCCCAACCTCCGCCGCAACATCAAGAGGAACAGCACGGTGGATTGCAACGGCGTCGTGTCCCTCATCGGCGGCCCGCCTTCCAGCATGCCCGGCGGGCGCCTTCTGCCTGAG
Seq C2 exon
GGTACGACTGAAATTGAAATTAAGAAGAAACCTGGTGGGTCTCTCTTGGTCTCGATGGATCAGGTGAACGCCTCCTATGGAAGGAAGGATCGTACCAACAGCGTGATGACCGGCTTGACCAACACCCTCGTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.500 C2=0.087
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(29.8=69.8)
A:
PF119333=DUF3451=FE(52.9=100)
C2:
PF119333=DUF3451=PD(16.0=78.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGATGATGGTGGTGGGA
R:
CGCTGTTGGTACGATCCTTCC
Band lengths:
345-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]