GgaINT0031509 @ galGal3
Intron Retention
Gene
ENSGALG00000006531 | Q9DDU8_CHICK
Description
NA
Coordinates
chr9:5425413-5430596:+
Coord C1 exon
chr9:5425413-5425456
Coord A exon
chr9:5425457-5430462
Coord C2 exon
chr9:5430463-5430596
Length
5006 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATA
5' ss Score
5.97
3' ss Seq
CTTTCAATATCTGCGTGCAGGAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCGGGACGATGAGCGACAGCGGGGAGCAGAACTACGGCGAGCGG
Seq A exon
GTAATACACGGAGCCTGAGCGCGCAGCCCAGCCGCCCCTCCCCTCACACGCACGCTTCCTCCGGCTCCGGGCGGGCGGAGCGGCCGCCCCCGTGTCGCCGTCGGGGCGGAGCGGGAGGGGCGGCGGCGGTGAGGAGGCCGCGGAGGAGGGCCGGGGCCGGGCTCGGCGCGGGAAGATGGCGGCGGGGAAGGAGGTGGGGGCGCGCGGCGGGGCGGTGAGGCGGCCCGGCGCCATCTTGGGCTGGTGACCGGGAGCGCCGAGAGGGACAAAATGGCCGAGGGCGGGCGGTGCGGGCCGGGCCCGGCGCTGCGGGGCGGCCTTCACCGTGCTGCGGCCGTCCGCGGGCTGCGGCTCCGGAGGAAGGCGGCCCCTCAGGGCCTGGGGCGGCTCTGGGAATTCGGGGGGGTGGGGGCCGGGGGGGGGGAGCGGCGGAGCTGAGGAGGAATCCCGCCGCCTCTTTGTCCTTTGTTATCCTCCCCCAAAACTGCATCGCGATCCGCTTCTGGGGAGAGGTTTTCTACTGTAGCCGTACGTGTAGTTGTTTCTCCCTTAGTCTCCGAGGTCTGTAGCCCTTACTGCTGTGTTTTGCTTGTCTCAGCGTCAGGCTGCAGCTTTTTAACTTGCAGAGCCAGGAATTGTGGGGGTGGTAAGGAGCTCAGAGTTTAAACCTTCACTGCAGGGGTCAAAAGAATTGAAATATGATGCAATAAAACTGAGGGGGGAGGGCAGTTGCAACGTCTTGCTGCATCTTTCTATGAGAATGGCCTTTTTTGCTACAGTAAAGCTGGGTAGGATGTGTTACTATTTCAGGATAGGGTAGGTCAGAAAAATGTCATTCTTGGAGGCTAAAAACACTGGATGGAATTGGATACTGAAAACTGGTGTTAAGGAATAGACTCGTGCCCCCAGTGCTCTTTTCCTTGCAGTTCATGCCATTCTTACACCAGGTGTGTTTCCCATTAGGACGCATTGCATCTCATGTACCCAAGATAGATTTCTGCGTGTTAGTTTAAGCAGATTTAATTGCAGTTGTGCAAGTCAGGCTCAAAACCAGTTTAAGATGGTAGCTTAACTTTAGTGAAGCTTGTCAGGCTAACCTGCATAGAGCTTTTTCTGTTCAAATGATATAAAGTATTAAGACCTTATTGTAGAGTCTTCTTGAAACATAATTTTGTAGAGTTTGTCTATTTCTATATTTGTGTACTTTTATTTAAAAAAAAAGCAAGTAATGGACAGACCATCTTCACCGTGAACAAGGCTTAAAGTAAGTTGCATCTGACTAGAGCATGTTTAGAAGAAGAATGTTATTCCTCTGTAACTGAACTTTGACTCATAGGTAAGTTGTATGCAGTTGTTTGTAAAACTAAAAGATACAGCCATTTAGTTACAAGCTTGCTATTGTAGAGTAGGTGAGGGAGTGGCTTGTTGAGTATATTACTACCAGTGTTGGTTGGTGTGTTTGAATAACCAAACCTTGCATTTTAGTCAGTGGCCTTCTATTTCCTGAAGCTGCAAGCACTGAAATTTTACTTGCAGAGTAGGAACTCTGCTTGGATAAATAATTGAGGGTATGACTTTACAGCTGTCTGTTAAGCTGTTCCAAGTCCGCACTGCCAACAAGAGTTGTGCTCCTGAAAGTGTGTTCCTGCTTTCTCCCTTGCAGCAGTGTTTGTACAGTCAGATCTGGGAACCGAGTCAGCTGAATTTGACCATTTCCAGCTGTGTGAGGCAGCCATGAATACTGTGTCCGTTGTGGGGATGAAGAAGCAGTACTGGGTGCTTCCACAAGTAATGGCACTTGCTGTTTTGGAGGCAACAGGAACTTAAACTGTCTTATGTGCCATAGTTTTGTTTGTTTTCCAAATGTTCCCAGTCAAATTCTTTCTCAGCTTATGCTTCATGATGAAATTAATCTCTAGAAACTTTAAAGCTGAAGAAGTGATAACTTATTCAATGTTACATTGCTTCAAGCACCGGAATATTGGCAGCACACCGTAACCAACTATGGTTGTTTCTGAAGACACTTTTGTTTTCATTCACTGTGACTGTGCTCACTGGAGTGTGTGTAGTTAAGTAGGGCTGGAAAGAAGGCTCGTTGCCAGAAAGTCTTGCTTCCTCTGTCCTCTGCATGTTTGCAGCCTGCAGGTAGCTACTCACCCTGCAAATTAATTGATAGTCTGGGAAGGTTAGAAGCAGTGTGGTAACACGATGCCACCAAGGTAGGTCATTCTTTCTGCCTCCTCCCCCAGCTTTTGGCCACACCTCCTGGTAGGCAGTGCAGTACCCTGAGCTGTCAGAAAGTAATTTGGCTTTTTTTTGCCAAGGGGCTGTTCTCTGGCAGCTCACAGTACCGTATAATCAGGTGATCCTGAACTTCAGGGGGACAAGCAGAAGCTGCTTTTTTTTTTTGCTGTTGGATCCATTGCTAAATTCAGGAATAGCATGGCTGAGCACGTGTGAAACTGGCACCCTGACACTTTGGGTCAATCTGCAGTCAGATTTGGTAATGCATAGCGATAGGTTGTATACCTTTCTTCAGGAAAGCAAGTAGAAACAGCTGAGTTGGTAAAGATTTAGTATAAATAGTACCAGTAATACTGACTATTTTAAGTTGTGAAACAAATCTATAACTTACAGTTCCAAGTGAGGAAAACCTGGATTGGGAAGCAGAGCTCTAACATGGTTCTGGTGCATACCTTACAGCTGCTTCTGCCTGTGGAAACTTTGTGCTTCAGCTTTTCAAGATTAGAAACAGTAGCTTTTCAGTAGGGAGCACCAGCTTTGATTTGCTTATGAGAATTGAATATAGCAGGAACAACAGTTTTTCTTTTTCCCCGTGATGTGAGCCTGATGCATCTTTCTTTTTTCTTGTTTTTTAAGCTTGAAAATCACAAAGAAGCAAAAAGGAAATGAAGGCACTGTGTTAAGACTAAAACAAAGTAGTGGACATCCCAGTATCAGTGAACAATGGGACAAACTTATGTGAACCTTCAGTGGGTCACATAATGGGGCATAAAGTTTGGGGCTTGCAGATGAAGATGTCAGCCATTTGCTTATGCTAATACCACTTTCCTACTGTGTTTATTCAAAGCTTAATGACTTCCAAAAGTCCTGAGAAGTGTGTAGGGAGTGCTGCTGTGCATGGTGCTCCTTGCTGCCTACCTCCCACAGCAGTGTGCATTTCTTGTCCTGTCACTGTGAGCCCTTCTGTCTTTGGGCATTGCTCTTTCCGCCTAGCAGAAGTCTGTCAGGAGGGTTATGTTCAGCGAGGAGAAGTAGATACCCTCAAAAGAACAGCAGCGTTAGTTGGTTTGTTTGTGTAATCCCTTCTTAAAATCTTTTTCTAAGTCTTTTTTTTTAACATTTGCTCCGAACTCATCTACATGGGCCTTATCTTTTGAAGGAAATAGCAAGTCTAGGGTAATCTTATTTGTAATTCAGGTCTCAGTATTTCCACTGCCCTTTGCAGAGTTGCTGAGCGTGATGGCAGTGGGTTAATACACCTTGATTTGATAAAGAAGAAATGGCTTCGACTAACTTTGCTTTCTTTCTATTGCTCTCAGTATTAATTAATCAAAAATCTGCTTCATGCTGCAAGTTCCTCTTCCCTCAACTGTTGTTATTTTACGGTAGGCAATTGTAAATAGCAAATCTGTTGTAAGTCACATGGAAGCAGCTTTAAGTGCAATTAAACGTTAGTTTAGCAAATGATTTTCTGAATGTCTGATACGGAATGCTCTCTAAGTTGAATGTTGAGATTTAAGAGATGTTAGAGAGAGATCAGATGTTTTGGAACAAATCTTGTCTGATGTTTTAGAAAGAAATGTCATGTCTGAAAGCCCTAATTAGGTTAGTTCTCTACCAAAGCAGAGTGCAAGTAAATAATACAGCAGATGGGATATTTTTCCAGAGCAGTGTGCGAGTGTTTTCACTCTGGAAAACTCCCATTTGGAGGCATGAGGCCTGCACATGTAACCAGGCTGGTGCAGGCAGAGAGGGCACAGTGTGCTGGGAAGCACTGACAGCAGGCTTGCTCACCTGTAAGTACATCCCAGAAAGCAATGAGGTTGTGGAAGTAAGTGGTTGAAAGAGGAACTGCGCTGCTTTCTGCATTCTTCTACTTTGAGGCATCTCTGGCTGCAGCAGGGACTTAATTTGACTTCTTGTTGGTTTTTTTTAAGTATGTGGCTCATAAAGTACCGAGTATGTGAGTTTCCTCATGCTGGCATTGATCAGTAGATCGTTAGTTGATCTGTTGTGCATTTGCTGTTAAATATAGGCATAAATAGCGAATTTAGTTACGTAGCGCTAAGCTTAAACTGAACCTGTCTATAAAATAATAGGGAAATGGTAGATACGATTCTGCATATGTAGTAAAAGTCCAGAACATTTTTTTTTTCTAGTTTCAGTTTTGGCACTAGATTTTATCCTGGAGTTTTTAAATATTCTTCATCCTGTTCTTTTTCTATTAAGGTTAATGTTGAAGAAGGAAAATGCGGAAGTCGCCATTTGACAAGTTTTATAAATGAGAATTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAAAAGAAAGTGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGGAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCTGAAAGCACTACGCTAAGTAATTACTAGTCTGTTTATGTGTCCCTGTATATTTTGCTAAACATGCATGCATTATCTGTTTAATAGCAAAAGTATATGCAGGGTAAAGAAGTGTCTACCAGGGAAGAACTTCTTAAAAATCTAGGCAGTTCTAATGCCAACTGCCCGGACACATAGATATGAATTTTTACCATTTATTTCACTGGAGCTTGTTTACAGACCGTAGGTAAACCAGAAATTGTATACAAATTAGGCTTTCAATATCTGCGTGCAG
Seq C2 exon
GAATCCCGTTCTGCTTCCAGAAGCGGAAGTGCTCATGGGTCTGGCAAGTCGGGGAGGCACACCCCTGCAAGATCTCGATCTAAGGAGGATTCAAGGCGTTCCAGGTCAAAATCTAGATCCAGGTCTGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006531:ENSGALT00000010555:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]