GgaINT0031509 @ galGal4
Intron Retention
Gene
ENSGALG00000006531 | TRA2B
Description
transformer-2 protein homolog beta [Source:RefSeq peptide;Acc:NP_990009]
Coordinates
chr9:3895926-3901183:+
Coord C1 exon
chr9:3895926-3896043
Coord A exon
chr9:3896044-3901049
Coord C2 exon
chr9:3901050-3901183
Length
5006 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATA
5' ss Score
5.97
3' ss Seq
CTTTCAATATCTGCGTGCAGGAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
ACTTCCTCTGCGGAGAGCGCTGGCGCCGGGGACGGTCGGGTCGGGTCGGCGCGGAGGTGGCGGGGAGTGGCGCGGCGGGACGATGAGCGACAGCGGGGAGCAGAACTACGGCGAGCGG
Seq A exon
GTAATACACGGAGCCTGAGCGCGCAGCCCAGCCGCCCCTCCCCTCACACGCACGCTTCCTCCGGCTCCGGGCGGGCGGAGCGGCCGCCCCCGTGTCGCCGTCGGGGCGGAGCGGGAGGGGCGGCGGCGGTGAGGAGGCCGCGGAGGAGGGCCGGGGCCGGGCTCGGCGCGGGAAGATGGCGGCGGGGAAGGAGGTGGGGGCGCGCGGCGGGGCGGTGAGGCGGCCCGGCGCCATCTTGGGCTGGTGACCGGGAGCGCCGAGAGGGACAAAATGGCCGAGGGCGGGCGGTGCGGGCCGGGCCCGGCGCTGCGGGGCGGCCTTCACCGTGCTGCGGCCGTCCGCGGGCTGCGGCTCCGGAGGAAGGCGGCCCCTCAGGGCCTGGGGCGGCTCTGGGAGTTCGGGGGGGTGGGGGCCGGGGGGGGGGAGCGGCGGAGCTGAGGAGGAATCCCGCCGCCTCTTTGTCCTTTGTTATCCTCCCCCAAAACTGCATCGCGATCCGCTTCTGGGGAGAGGTTTTCTACTGTAGCCGTACGTGTAGTTGTTTCTCCCTTAGTCTCCGAGGTCTGTAGCCCTTACTGCTGTGTTTTGCTTGTCTCAGCGTCAGGCTGCAGCTTTTTAACTTGCAGAGCCAGGAATTGTGGGGGTGGTAAGGAGCTCAGAGTTTAAACCTTCACTGCAGGGGTCAAAAGAATTGAAATATGATGCAATAAAACTGAGGGGGGAGGGCAGTTGCAACGTCTTGCTGCATCTTTCTATGAGAATGGCCTTTTTTGCTACAGTAAAGCTGGGTAGGATGTGTTACTATTTCAGGATAGGGTAGGTCAGAAAAATGTCATTCTTGGAGGCTAAAAACACTGGATGGAATTGGATACTGAAAACTGGTGTTAAGGAATAGACTCGTGCCCCCAGTGCTCTTTTCCTTGCAGTTCATGCCATTCTTACACCAGGTGTGTTTCCCATTAGGACGCATTGCATCTCATGTACCCAAGATAGATTTCTGCGTGTTAGTTTAAGCAGATTTAATTGCAGTTGTGCAAGTCAGGCTCAAAACCAGTTTAAGATGGTAGCTTAACTTTAGTGAAGCTTGTCAGGCTAACCTGCATAGAGCTTTTTCTGTTCAAATGATATAAAGTATTAAGACCTTATTGTAGAGTCTTCTTGAAACATAATTTTGTAGAGTTTGTCTATTTCTATATTTGTGTACTTTTATTTAAAAAAAAAGCAAGTAATGGACAGACCATCTTCACCGTGAACAAGGCTTAAAGTAAGTTGCATCTGACTAGAGCATGTTTAGAAGAAGAATGTTATTCCTCTGTAACTGAACTTTGACTCATAGGTAAGTTGTATGCAGTTGTTTGTAAAACTAAAAGATACAGCCATTTAGTTACAAGCTTGCTATTGTAGAGTAGGTGAGGGAGTGGCTTGTTGAGTATATTACTACCAGTGTTGGTTGGTGTGTTTGAATAACCAAACCTTGCATTTTAGTCAGTGGCCTTCTATTTCCTGAAGCTGCAAGCACTGAAATTTTACTTGCAGAGTAGGAACTCTGCTTGGATAAATAATTGAGGGTATGACTTTACAGCTGTCTGTTAAGCTGTTCCAAGTCCGCACTGCCAACAAGAGTTGTGCTCCTGAAAGTGTGTTCCTGCTTTCTCCCTTGCAGCAGTGTTTGTACAGTCAGATCTGGGAACCGAGTCAGCTGAATTTGACCATTTCCAGCTGTGTGAGGCAGCCATGAATACTGTGTCCGTTGTGGGGATGAAGAAGCAGTACTGGGTGCTTCCACAAGTAATGGCACTTGCTGTTTTGGAGGCAACAGGAACTTAAACTGTCTTATGTGCCATAGTTTTGTTTGTTTTCCAAATGTTCCCAGTCAAATTCTTTCTCAGCTTATGCTTCATGATGAAATTAATCTCTAGAAACTTTAAAGCTGAAGAAGTGATAACTTATTCAATGTTACATTGCTTCAAGCACCGGAATATTGGCAGCACACCGTAACCAACTATGGTTGTTTCTGAAGACACTTTTGTTTTCATTCACTGTGACTGTGCTCACTGGAGTGTGTGTAGTTAAGTAGGGCTGGAAAGAAGGCTCGTTGCCAGAAAGTCTTGCTTCCTCTGTCCTCTGCATGTTTGCAGCCTGCAGGTAGCTACTCACCCTGCAAATTAATTGATAGTCTGGGAAGGTTAGAAGCAGTGTGGTAACACGATGCCACCAAGGTAGGTCATTCTTTCTGCCTCCTCCCCCAGCTTTTGGCCACACCTCCTGGTAGGCAGTGCAGTACCCTGAGCTGTCAGAAAGTAATTTGGCTTTTTTTTGCCAAGGGGCTGTTCTCTGGCAGCTCACAGTACCGTATAATCAGGTGATCCTGAACTTCAGGGGGACAAGCAGAAGCTGCTTTTTTTTTTTGCTGTTGGATCCATTGCTAAATTCAGGAATAGCATGGCTGAGCACGTGTGAAACTGGCACCCTGACACTTTGGGTCAATCTGCAGTCAGATTTGGTAATGCATAGCGATAGGTTGTATACCTTTCTTCAGGAAAGCAAGTAGAAACAGCTGAGTTGGTAAAGATTTAGTATAAATAGTACCAGTAATACTGACTATTTTAAGTTGTGAAACAAATCTATAACTTACAGTTCCAAGTGAGGAAAACCTGGATTGGGAAGCAGAGCTCTAACATGGTTCTGGTGCATACCTTACAGCTGCTTCTGCCTGTGGAAACTTTGTGCTTCAGCTTTTCAAGATTAGAAACAGTAGCTTTTCAGTAGGGAGCACCAGCTTTGATTTGCTTATGAGAATTGAATATAGCAGGAACAACAGTTTTTCTTTTTCCCCGTGATGTGAGCCTGATGCATCTTTCTTTTTTCTTGTTTTTTAAGCTTGAAAATCACAAAGAAGCAAAAAGGAAATGAAGGCACTGTGTTAAGACTAAAACAAAGTAGTGGACATCCCAGTATCAGTGAACAATGGGACAAACTTATGTGAACCTTCAGTGGGTCACATAATGGGGCATAAAGTTTGGGGCTTGCAGATGAAGATGTCAGCCATTTGCTTATGCTAATACCACTTTCCTACTGTGTTTATTCAAAGCTTAATGACTTCCAAAAGTCCTGAGAAGTGTGTAGGGAGTGCTGCTGTGCATGGTGCTCCTTGCTGCCTACCTCCCACAGCAGTGTGCATTTCTTGTCCTGTCACTGTGAGCCCTTCTGTCTTTGGGCATTGCTCTTTCCGCCTAGCAGAAGTCTGTCAGGAGGGTTATGTTCAGCGAGGAGAAGTAGATACCCTCAAAAGAACAGCAGCGTTAGTTGGTTTGTTTGTGTAATCCCTTCTTAAAATCTTTTTCTAAGTCTTTTTTTTTAACATTTGCTCCGAACTCATCTACATGGGCCTTATCTTTTGAAGGAAATAGCAAGTCTAGGGTAATCTTATTTGTAATTCAGGTCTCAGTATTTCCACTGCCCTTTGCAGAGTTGCTGAGCGTGATGGCAGTGGGTTAATACACCTTGATTTGATAAAGAAGAAATGGCTTCGACTAACTTTGCTTTCTTTCTATTGCTCTCAGTATTAATTAATCAAAAATCTGCTTCATGCTGCAAGTTCCTCTTCCCTCAACTGTTGTTATTTTACGGTAGGCAATTGTAAATAGCAAATCTGTTGTAAGTCACATGGAAGCAGCTTTAAGTGCAATTAAACGTTAGTTTAGCAAATGATTTTCTGAATGTCTGATACGGAATGCTCTCTAAGTTGAATGTTGAGATTTAAGAGATGTTAGAGAGAGATCAGATGTTTTGGAACAAATCTTGTCTGATGTTTTAGAAAGAAATGTCATGTCTGAAAGCCCTAATTAGGTTAGTTCTCTACCAAAGCAGAGTGCAAGTAAATAATACAGCAGATGGGATATTTTTCCAGAGCAGTGTGCGAGTGTTTTCACTCTGGAAAACTCCCATTTGGAGGCATGAGGCCTGCACATGTAACCAGGCTGGTGCAGGCAGAGAGGGCACAGTGTGCTGGGAAGCACTGACAGCAGGCTTGCTCACCTGTAAGTACATCCCAGAAAGCAATGAGGTTGTGGAAGTAAGTGGTTGAAAGAGGAACTGCGCTGCTTTCTGCATTCTTCTACTTTGAGGCATCTCTGGCTGCAGCAGGGACTTAATTTGACTTCTTGTTGGTTTTTTTTAAGTATGTGGCTCATAAAGTACCGAGTATGTGAGTTTCCTCATGCTGGCATTGATCAGTAGATCGTTAGTTGATCTGTTGTGCATTTGCTGTTAAATATAGGCATAAATAGCGAATTTAGTTACGTAGCGCTAAGCTTAAACTGAACCTGTCTATAAAATAATAGGGAAATGGTAGATACGATTCTGCATATGTAGTAAAAGTCCAGAACATTTTTTTTTTCTAGTTTCAGTTTTGGCACTAGATTTTATCCTGGAGTTTTTAAATATTCTTCATCCTGTTCTTTTTCTATTAAGGTTAATGTTGAAGAAGGAAAATGCGGAAGTCGCCATTTGACAAGTTTTATAAATGAGAATTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAAAAGAAAGTGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGGAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCTGAAAGCACTACGCTAAGTAATTACTAGTCTGTTTATGTGTCCCTGTATATTTTGCTAAACATGCATGCATTATCTGTTTAATAGCAAAAGTATATGCAGGGTAAAGAAGTGTCTACCAGGGAAGAACTTCTTAAAAATCTAGGCAGTTCTAATGCCAACTGCCCGGACACATAGATATGAATTTTTACCATTTATTTCACTGGAGCTTGTTTACAGACCGTAGGTAAACCAGAAATTGTATACAAATTAGGCTTTCAATATCTGCGTGCAG
Seq C2 exon
GAATCCCGTTCTGCTTCCAGAAGCGGAAGTGCTCATGGGTCTGGCAAGTCGGGGAGGCACACCCCTGCAAGATCTCGATCTAAGGAGGATTCAAGGCGTTCCAGGTCAAAATCTAGATCCAGGTCTGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006531:ENSGALT00000010555:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]