GgaINT0054929 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27839125-27840291:+
Coord C1 exon
chr5:27839125-27839189
Coord A exon
chr5:27839190-27840222
Coord C2 exon
chr5:27840223-27840291
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GATGTATCC
5' ss Score
1.64
3' ss Seq
CCTGAATGCTTGCATCACAGACA
3' ss Score
4.14
Exon sequences
Seq C1 exon
ATAAGGACCTAAAGACAGAAGGATTTGAACTAGAATCCTGCCGCAGCATGATCGCTTTGATGGAT
Seq A exon
GTATCCTTTGCCAGTGAATGAGAAGTGCCTGATAACACACTGCTCCACCTGAGTTTTACTCCCCGACCGCACACACAAAAATTGTTTTTAGTAAGCTGGAAAGCTGACCAGTGTGTTACAGACTGTTGTCAGACAACCCAGCATTCCCGTGTGGCATACATTAACTGCAATCATCTCAAAGTTAGCATAGGTGGCAGATGAAAATATCTCAAAACACAGAACAACGGAATAAGTATGATACCATTCCTTTAAGCCATCTCAACAGAACTACAGTTCTTGCCAACAAATTCAGTCTCTTTCTCTACGTTTTCTACATATCTTTACATTTTCAACACATCACACATTCCGCCCTGTGCGTAGCACTCAGAGCGTACAGTGACTGTCTCAGTGCAAGTGCAATAAAACACACTGCAAGATGTCACGTGGCATTGCCTCCAATACAGCATCACTCAGTTTTCCTACCTGAGTAGGGAAACACATACATTTCCATGTACTTCAATAACATATGATTTTGAGAGAACATAAGTACATTCAAACCAGACCAGACCAAACTTATAATTACAGCCTAGAACCATTACAACTGGAGGCTGAATGCAGTTCAGTAAATTATTTTAGTCAACGTTTTGCTCGATTCTCAATTCATTTTAGCAAGGCAGAAAAAGTTGCACTCCAAGATAAAGCTCAGTTGTCTTAAGCAGTTTCGGGAGAATTACACCAGTGGGGGCACTGGGAAAAAGCCACTAAAACACCCTGCTTTATGTACATTATAACAGCTGCAGGACCAAGTCTCCTGCCTGTATCAGTGGTTTATTACTACACAAGGAAACAGTGCTTCACAATCCCGAAACAAAATAACACGCTTAATAACCAAAGCACTCACAAACACTTTACTGTGCTATTCAGCAATCTCTCAGTACTCAGGAATCCTGAGCTGGGTTTCATACTCATCCCCCCTCACTGGTACCCATAGAAATAATTAGTTTTCTATTTAAAATGTTGGTTTTTTTTTTTTACCTGAATGCTTGCATCACAG
Seq C2 exon
ACAGACGGCTCAGGGAAGATCAACTTTGATGAGTTCCGACACCTCTGGGACAAGATCAAAAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]