RnoINT0029066 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112275619-112276521:+
Coord C1 exon
chr3:112275619-112275683
Coord A exon
chr3:112275684-112276452
Coord C2 exon
chr3:112276453-112276521
Length
769 bp
Sequences
Splice sites
5' ss Seq
GATGTATCC
5' ss Score
1.64
3' ss Seq
TCCTGACATCTATCCTCCAGACA
3' ss Score
6.78
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACAAGGGTTCACTCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
Seq A exon
GTATCCTTCCAGTCCACAAAGCTAACTCGCTGACATCTGCCCATAGGTCAGGGGAACAGTTAAAGGTGCCCACGCCCAGGGAAAGGCTTAAGGGGATCCCCGCAGATACTCTCGGATGTCTGGCAGAGGTTAGAAAAGGATCCTGGGTGGTGGCTGGTCATCACCTCTGGCTCATACCACAGGCGTGAAACCCTACTTGGCATGCTGCCCAAACAAGGACTGTTTCTAGGGAACAGGCCCTGTGAGCTATAGAGATGGCAGGAATTCTGGTTAGAACCTGACAGGGTCAGGGGCCCTGGGAAAGGCTGCTGAGTTTTTTTTTTTTTTTTTAAGATTTATTTATTATGTATACAGCATTCTGCCTGCATGTACTCCCACATGCCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTTTTAACTGCTGAGCCATCTCTCCAACTCCTAGTTTAAACTTTAAATGTTTTAAAATGTTTTTTACTTATTTGAAGAGAGCATCAGATCCCATTACAGATGGTCATGAGCCACCATGTGGTTGCTGAGAATTGAACTCAAGACCTCTGGAAGAGCAGACAATGCTTTTAACCTCTGAGCTGTCTCCCCAGCCCAAAGGTTGCTGGTGTAACCACCTTCCCTGCCACCCCTAGACACCCCTCCCAGTTCAGGGGATTTTACTATGTGCCTGTGGTCCTGACATCTATCCTCCAG
Seq C2 exon
ACAGATGGCTCTGGGAGACTGAATCTTCAAGAGTTCCATCACCTCTGGAAAAAGATCAAGGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]