GgaINT0129164 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7921151-7921686:-
Coord C1 exon
chr18:7921592-7921686
Coord A exon
chr18:7921271-7921591
Coord C2 exon
chr18:7921151-7921270
Length
321 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TTTAACTTCTGTGTCCTCAGGAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
CTGTGCTTTGCTGTGTGCATGCTGGGCAACCCCTCGGTCCTGCTGCTGGATGAGCCATCGACTGGCATGGACCCCAATGGACAGCGCTGCATTTG
Seq A exon
GTGAGCAGGGCCCCAGGGGCTGGAAGCCAACAGTGGATGTGTAGGGTTGGTTAAAGAACATTCCAGTCCATCTGCAGTTAATGCTACTCGTATCATCTTTAACAAAACCTGTTTTCTTGGTTCTCCTTATCTAAAGCGTTAAGAAGTTCTCCTTGTTGTGGATGTTAGGATAGTTGCATTTGAGTTTAGAAGAATCCAAAGCTGAACTTGTGTCAAAAATAATTTTAGGGGTTAGAGGGGCAAAAGGGGCAAAACTTGGATAAGAAAATGCCTCATATTTCTAGGTAGTGTTGGCTCCTTTTTTAACTTCTGTGTCCTCAG
Seq C2 exon
GAAAATGATTCATGCTGCCCTGAGCACCCACGAGACAGGAGCTGTGCTGACCACACACTACATGGAGGAGGCAGAGGCAGTGTGCGACCGTGTGGCCATCCTGGTGGCTGGGCAGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.6=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTTGCTGTGTGC
R:
CTGCCCAGCCACCAGGAT
Band lengths:
210-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]