GgaINT0129164 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8186457-8186992:-
Coord C1 exon
chr18:8186898-8186992
Coord A exon
chr18:8186577-8186897
Coord C2 exon
chr18:8186457-8186576
Length
321 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TTTAACTTCTGTGTCCTCAGGAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
CTGTGCTTTGCTGTGTGCATGCTGGGCAACCCCTCGGTCCTGCTGCTGGATGAGCCATCGACTGGCATGGACCCCAATGGACAGCGCTGCATTTG
Seq A exon
GTGAGCAGGGCCCCAGGGGCTGGAAGCCAACAGTGGATGTGTAGGGTTGGTTAAAGAACATTCCAGTCCATCTGCAGTTAATGCTACTCGTATCATCTTTAACAAAACCTGTTTTCTTGGTTCTCCTTATCTAAAGCGTTAAGAAGTTCTCCTTGTTGTGGATGTTAGGATAGTTGCATTTGAGTTTAGAAGAATCCAAAGCTGAACTTGTGTCAAAAATAATTTTAGGGGTTAGAGGGGCAAAAGGGGCAAAACTTGGATAAGAAAATGCCTCATATTTCTAGGTAGTGTTGGCTCCTTTTTTAACTTCTGTGTCCTCAG
Seq C2 exon
GAAAATGATTCATGCTGCCCTGAGCACCCACGAGACAGGAGCTGTGCTGACCACACACTACATGGAGGAGGCAGAGGCAGTGTGCGACCGTGTGGCCATCCTGGTGGCTGGGCAGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.6=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTTGCTGTGTGC
R:
CTGCCCAGCCACCAGGAT
Band lengths:
210-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]