RnoINT0010424 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98242898-98243992:-
Coord C1 exon
chr10:98243898-98243992
Coord A exon
chr10:98243018-98243897
Coord C2 exon
chr10:98242898-98243017
Length
880 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ATGTTGTCTTGACAATGTAGGCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTGTGTTTTGTGCTGAGCATCCTGGGAAACCCTTCTATATTGCTTCTGGATGAGCCTTCAACTGGGCTGGATCCTGAAGGGCAACAGCAAATATG
Seq A exon
GTGAGGAGATGCTGCCGTGGGTTTGAACACACACCTAGAAGGGAGTTTGAAAACAGTTTCACTCACTCAAAAACTGTTTCTACCAAGCATAAGGACCAGGGTTCGGATTCCCAACACCCACCTAAAACTCCAGGGAGTAATCTTGCTTGCTGTAAGCCCAGCACTGTGGAGTCAAAGTCAGGAAGAGAGCTGGAGTTCACTGACTAGCTAGTCTTGAACCAGTTGGTGAGCTCCAGGTTCAGTGAGAGCCACAATTTCTAAAATTAATTTGGAGAGCAGGATACCCAACATTGGCCTCTAGCCTTTACCTACACATACACACATGTACACCTACACACACATTGCACATGCACACAAGCACATAAAAACACACAGAATTATAAAGGTATGTCTTAAAACTTTTTATGTACATAAAAAACAAAACTACCAACACCCTTAGTAAAATCGATGGTCTACAAAATAGCATTTCTCTAATAATAGTTCTCAAACATTTCTGAGGAAGGAAGAACACATAGCATTAGGCTGCAAGCCACTCACTGTGTGTACCAGAACAGCACAGATATCTCTGGGTTGGTACAGGAACTTTTGCACCACAATCAAGTGTCTGGTGCTGGGCATGAGAACAGTGGTTCTTGGTAAGTTGTAAAACCCATCACTTATTCTGCAATGACTTCCTTCTGCTGGCTTGGGTGTCACTGTTGAGTTTTGCATCATTTTGTCCCCATGTGCATGCCTGTCTTGACAGAATTTCCCTCTTCATACAAGTTTGTAATAAATGCTGTATTCTGCAATTGCTTTTTCAATGCATGCTTCCTTTCTCTATCCTTTTCTTATTTATTACACTACTTTCTAAATTGTGAATGTTGTCTTGACAATGTAG
Seq C2 exon
GCAAGCAATCAGGGCCATCATAAAAAATACAGACAGGGGCGCCCTTCTCACCACCCATTACATGGCAGAGGCTGAGGCTCTGTGTGACCGCGTGGCCATTCTGGTGTCTGGAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(14.2=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTTGTGCTGAGCATCCT
R:
CTCAACCTTCCAGACACCAGA
Band lengths:
214-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]