GgaINT1004322 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19033714-19035390:+
Coord C1 exon
chr7:19033714-19033995
Coord A exon
chr7:19033996-19035336
Coord C2 exon
chr7:19035337-19035390
Length
1341 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TAATAAACCTTGTTTTTTAGGCA
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTGGTTGTGAATGCTCTTACTGGAGCAATCCCATCCATAATGAATGTGCTTCTGGTTTGTCTTACATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGCAAGTTCTTTTACTGTGTTAACACCACAACTGGAGTTCAATTCAAACCATATGAAGTTGATAACAAAAGTATGTGTGAAAATCTTGGGAACACTGCATCAGATGTTCGATGGAAAAATGTGAAAGTAAACTTCGATAATGTTGGAGCTGGTTATCTTTCTCTGCTTCAAGTA
Seq A exon
GTAAGTGTATAATTTTGATAAATTTTTCCAGCTTAAAGTTGTGTAGCAGTAGCATTTAATTCCATAATTTTCAGTGTTATTTTACAATATATACATAAAGTATTTGTGTTTTATGAAGCTACTTAGTGTTGATTATGGTAACAATCTCATAGATTCTACAGTTGTTTTGGAAGGAGATAAATACCTAATATATTCCAAATAAATACAAGGTTCCTTTGCATCCAGCCATTCCTTTTCCAATTCTACGTGTAAAAATGTAATCTCTCCTCCACCCCCTCCAAAACAAACAAACAAACAAAGAAAAAAAAAAAGGGATTTTTTTTATTATTTGCTTGATCCATTACGGTGTTAAGGCACGTTGATGCAGATTTTTGGCATCATACTCCGATACACTGTAAGGCTTATTCAAATAATAATAGTGGGTATCTCCATATCAATTACACATTTCTCTATTGATATGTAAATAAAAAGATAAAAAGATGAAAGTAAAACATTTTAAATTCATTTTTTTCATTTCTGTTCTTTCCCTTTCTGTTATTCCTGATAGCTTCAAGTGGGTTTTTTTGGTTTTTTCTTTTTGTTTTTTTTTTTTTGGTAGGTAATTTGTAGATTGTTTCTAAACTCTAAATGAGCAATTGCAGAATTTAGAAATGCTGGGTTTGTAAGCACAAGTGTCTTTTCTGAAGCAACATGTATAAACTGGAGCCAGTAGGACAGAAACTTGCATTCTTAATCAGGTTCACTTGACAAACTGCTTCTGGGAAAACATTTGTGTTCATAAACACTTGGCCGTTATTCTGTCTTTTAAACTCTCCAGCTGGTAGTGGATAGTTAGTGTTATGCTAGTAAGCTGGCAGCTGATTGCTCAGGGGAGAAGCAGTAGTTATTTCTAAATGGCACTGAGTAATTGCATAAATCAAGAAGATTTTTCAGGACTACTTAAATTCTGGACTTCCTTTTAGAATTACTTACATACTGTGTCTGAAAATGCCAACCAGTGGTGGCATTCTCTAGTTTTTGTGGTCAGAAATTTCTAAGAGCTAAGAACTGCAGTTTGTATTGTATGCTCAGATATTTATTTCAACTTACTCCACATAGAATTTACATGTATTTTCATGGAGATTATAATCTGTTTAGTGCTTACGTACTAAGAAGGATTATTCCACAGTAAATTGCTTTATTGAATAATTAGTTCATTTCTTACCACCATCCCTTAATAGTTACTGCTATTTCTTTGTACAAGTACATTGCAAAAAGGTTGTTTTGTTCAGAATGTTTAAAATATTTGATGTTTCTTCTTATTTGAAGCTTTTATGGACACTAATAAACCTTGTTTTTTAG
Seq C2 exon
GCAACATTTAAAGGATGGATGGAAATCATGTATGCTGCCGTTGACTCTAGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGTGAATGCTCTTACTGGA
R:
ATCCCTAGAGTCAACGGCAGC
Band lengths:
336-1677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]