GgaINT1030668 @ galGal4
Intron Retention
Gene
ENSGALG00000027434 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr10:19517008-19517639:+
Coord C1 exon
chr10:19517008-19517199
Coord A exon
chr10:19517200-19517464
Coord C2 exon
chr10:19517465-19517639
Length
265 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
ACCCCAGAACGTTGCTGCAGGTC
3' ss Score
4.17
Exon sequences
Seq C1 exon
GGCGTGAAGGAGTTCAAGTGCGAGGTGTGCGGGCGCGAGTTCACGCTGCAGGCCAACATGAAGCGGCACATGCTCATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACGTTTGTGCAGAAGCAGACGCTGAAGACCCACATGATTGTGCACTCACCGGTGAAGCCATTCAAGTGCAAG
Seq A exon
GTACCGTGGGGCCCCGGGGGTGGCCGGGGATGGCGCCCAGCATGCTGGGTTCTGCGAGTGCGGGGGCTGCAGAAATAGGAGCAGGGAAGGAGAGGTGCGGGAGGTTGGCGGGGAGGGCGGGCAGCCCCGTTAGAGATCACTGGGGAGCAGTCGGGGCCCCCAGCAGTGAGGTCAGTTCTGCACAGCCGCATCCCCAAGGCTGCGGCCGGGATTTTGCTGGGGTTGGGGGCTGCAGGACCCTGCTAACCCCAGAACGTTGCTGCAG
Seq C2 exon
GTCTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCGGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTCAACTTGAAAGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTGATGGACATCAGTCTGGACAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027434:ENSGALT00000044315:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(75.0=65.6),PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCAAGTGCGAGGTGTG
R:
GGCTCAGGTTGCCTTTCAAGT
Band lengths:
308-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]