RnoINT0168617 @ rn6
Intron Retention
Gene
ENSRNOG00000014278 | Zfp710
Description
zinc finger protein 710 [Source:RGD Symbol;Acc:1306491]
Coordinates
chr1:141865600-141866280:+
Coord C1 exon
chr1:141865600-141865791
Coord A exon
chr1:141865792-141866105
Coord C2 exon
chr1:141866106-141866280
Length
314 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGGTACCCTTCCTGTTCCAGGTG
3' ss Score
11.55
Exon sequences
Seq C1 exon
GGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACCCTGCAGGCCAACATGAAGCGCCACATGCTCATCCACACCAGCGTGCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTTGTGCAGAAGCAAACCCTCAAGACCCACATGATCGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAG
Seq A exon
GTATGGGGCAGTTCCCATGGCCTGCCTGGGCAGTGCTTGCCTGGGCTTGGAGGTGTTGGGGCAGAGGGCGGGTGTGGGTGAGGGGATGGGGCCTTAGAGCAGCTGGAGTTGTACTTCTGGGGTGAAGGTTGTGGTGCAGTCCCTGCAGGGGCTTGGTCAGGTCCCTACTATAGGACGTGAGCCGCAGTTTCTACCTCAGTGCCTTTACCTCTCTCTGTGGTCGCGGAGGAAGGGACAGCGTGCTGTGTGCAGCAGGGGTAGATCAGCCAGGATGGCGGGCTCCCCACAGCCCTCTGGTACCCTTCCTGTTCCAG
Seq C2 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014278:ENSRNOT00000064034:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGTGTGAGGTCTGTGGC
R:
TGTCCAGGCTGATGTCCATGA
Band lengths:
349-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]