Special

MmuINT0179773 @ mm10

Intron Retention

Gene
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80085951-80086608:+
Coord C1 exon
chr7:80085951-80086142
Coord A exon
chr7:80086143-80086433
Coord C2 exon
chr7:80086434-80086608
Length
291 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGGTACCCTCCCTGTTCCAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACATGAAGCGCCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAAGACCCACATGATTGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAG
Seq A exon
GTATGGGACATTCCCGTGGCCCGCCTGGCCGCTAAGGGGGTGGAGCGAAGGGCCGGTGAGGGGCGGAGCCTTGGAACTGCTGAAGTGGTACTTCTTGGGGACTCGGAGAGGGGTGAACGCTGTGAGCTGCAGGTTCCACCGCAGGCCCCCAGCGAGCAGATGTTTTTATCTCATTCTGTGGTCTCAGAGGACCAGAGGACCAGAGGACGGGACAGCGTGCCGTGTGCGGTGGGGGCAGACTGGCCGGGGTGTCAGGTTCCTCATAGCCCTCTGGTACCCTCCCTGTTCCAG
Seq C2 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897:ENSMUST00000164056:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):

C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATGCTGATCCACACCAG
R:
TGTCCAGGCTGATGTCCATGA
Band lengths:
296-587
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types